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| *[[http://www.ebi.ac.uk/Tools/msa/clustalw2/|clustalW2]]. Multiple Sequence Alignment. Alternative to MUSCLE | *[[http://www.ebi.ac.uk/Tools/msa/clustalw2/|clustalW2]]. Multiple Sequence Alignment. Alternative to MUSCLE | ||
| *[[http://www.megasoftware.net/|MEGA]]. integrated tool for conducting sequence alignment, inferring phylogenetic trees, estimating divergence time. Fantastic GUI. | *[[http://www.megasoftware.net/|MEGA]]. integrated tool for conducting sequence alignment, inferring phylogenetic trees, estimating divergence time. Fantastic GUI. | ||
| - | *[[http://www.mbio.ncsu.edu/bioedit/bioedit.html|BioEdit]] Sequence Alignment Editor (for PC only) with various molecular evolution functions. Nice GUI. Use to be one of the leading program. Outdated? | + | *[[http://www.mbio.ncsu.edu/bioedit/bioedit.html|BioEdit]] Sequence Alignment Editor (for PC only) with various molecular evolution functions. Nice GUI. Use to be one of the leading program. Outdated (?) and no longer supported. |
| *Most proprietary software (Sequencher, Geneious, CLC Genomics) will also permit multiple sequence alignments. | *Most proprietary software (Sequencher, Geneious, CLC Genomics) will also permit multiple sequence alignments. | ||
