Differences

This shows you the differences between two versions of the page.

--- sequence_alignment [2014/11/14 21:00]
sebastien.renaut
+++ sequence_alignment [2014/11/17 18:27] (current)
sebastien.renaut
@@ Line 1: / Line 1: @@
 === Sequence Alignments ===
-  *[[http://www.ebi.ac.uk/Tools/msa/muscle/|MUSCLE]] Multiple Sequence Alignment. Also has a nice web interface to submit jobs directly online
+  *[[http://www.ebi.ac.uk/Tools/msa/muscle/|MUSCLE]]. Multiple Sequence Alignment. Also has a nice web interface to submit jobs directly online
-  *[[http://mafft.cbrc.jp/alignment/software/|MAFFT]] Multiple Sequence Alignment program for unix-like operating systems. Alternative to MUSCLE
+  *[[http://mafft.cbrc.jp/alignment/software/|MAFFT]]. Multiple Sequence Alignment program for unix-like operating systems. Alternative to MUSCLE
-  *[[http://www.tcoffee.org/Projects/tcoffee/|t-coffee]] Multiple Sequence Alignment. Alternative to MUSCLE
+  *[[http://www.tcoffee.org/Projects/tcoffee/|t-coffee]]. Multiple Sequence Alignment. Alternative to MUSCLE
-  *[[http://www.ebi.ac.uk/Tools/msa/clustalw2/|clustalW2]] Multiple Sequence Alignment. Alternative to MUSCLE
+  *[[http://www.ebi.ac.uk/Tools/msa/clustalw2/|clustalW2]]. Multiple Sequence Alignment. Alternative to MUSCLE
   *[[http://www.megasoftware.net/|MEGA]]. integrated tool for conducting sequence alignment, inferring phylogenetic trees, estimating divergence time. Fantastic GUI.
-  *proprietary software.
+  *[[http://www.mbio.ncsu.edu/bioedit/bioedit.html|BioEdit]] Sequence Alignment Editor (for PC only) with various molecular evolution functions. Nice GUI. Use to be one of the leading program. Outdated (?) and no longer supported.
+  *Most proprietary software (Sequencher, Geneious, CLC Genomics) will also permit multiple sequence alignments.