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sequence_alignment [2014/11/13 21:06] sebastien.renaut |
sequence_alignment [2014/11/17 18:27] (current) sebastien.renaut |
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| === Sequence Alignments === | === Sequence Alignments === | ||
| - | *muscle | + | *[[http://www.ebi.ac.uk/Tools/msa/muscle/|MUSCLE]]. Multiple Sequence Alignment. Also has a nice web interface to submit jobs directly online |
| - | *mafft | + | *[[http://mafft.cbrc.jp/alignment/software/|MAFFT]]. Multiple Sequence Alignment program for unix-like operating systems. Alternative to MUSCLE |
| - | *t-coffee | + | *[[http://www.tcoffee.org/Projects/tcoffee/|t-coffee]]. Multiple Sequence Alignment. Alternative to MUSCLE |
| - | *proprietary | + | *[[http://www.ebi.ac.uk/Tools/msa/clustalw2/|clustalW2]]. Multiple Sequence Alignment. Alternative to MUSCLE |
| - | *MEGA | + | *[[http://www.megasoftware.net/|MEGA]]. integrated tool for conducting sequence alignment, inferring phylogenetic trees, estimating divergence time. Fantastic GUI. |
| + | *[[http://www.mbio.ncsu.edu/bioedit/bioedit.html|BioEdit]] Sequence Alignment Editor (for PC only) with various molecular evolution functions. Nice GUI. Use to be one of the leading program. Outdated (?) and no longer supported. | ||
| + | *Most proprietary software (Sequencher, Geneious, CLC Genomics) will also permit multiple sequence alignments. | ||
