NGS sequence alignment and variant calling
###sequence alignment gatk
bwa
bowtie
###variant calling samtools vcftools gatk
###GBS and RAD data tassel (uneak) stacks pyrad
##all in one proprietary software geneious clc genomics
basic_tools_for_ngs_sequence_alignment_and_variant_snp_calling
NGS sequence alignment and variant calling
###sequence alignment gatk
bwa
bowtie
###variant calling samtools vcftools gatk
###GBS and RAD data tassel (uneak) stacks pyrad
##all in one proprietary software geneious clc genomics