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sequence_alignment [2014/11/13 16:05] sebastien.renaut created |
sequence_alignment [2014/11/17 13:27] (current) sebastien.renaut |
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| === Sequence Alignments === | === Sequence Alignments === | ||
| - | muscle | + | |
| - | mafft | + | *[[http://www.ebi.ac.uk/Tools/msa/muscle/|MUSCLE]]. Multiple Sequence Alignment. Also has a nice web interface to submit jobs directly online |
| - | t-coffee | + | *[[http://mafft.cbrc.jp/alignment/software/|MAFFT]]. Multiple Sequence Alignment program for unix-like operating systems. Alternative to MUSCLE |
| - | proprietary | + | *[[http://www.tcoffee.org/Projects/tcoffee/|t-coffee]]. Multiple Sequence Alignment. Alternative to MUSCLE |
| - | MEGA | + | *[[http://www.ebi.ac.uk/Tools/msa/clustalw2/|clustalW2]]. Multiple Sequence Alignment. Alternative to MUSCLE |
| + | *[[http://www.megasoftware.net/|MEGA]]. integrated tool for conducting sequence alignment, inferring phylogenetic trees, estimating divergence time. Fantastic GUI. | ||
| + | *[[http://www.mbio.ncsu.edu/bioedit/bioedit.html|BioEdit]] Sequence Alignment Editor (for PC only) with various molecular evolution functions. Nice GUI. Use to be one of the leading program. Outdated (?) and no longer supported. | ||
| + | *Most proprietary software (Sequencher, Geneious, CLC Genomics) will also permit multiple sequence alignments. | ||
