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sequence_alignment [2014/11/17 13:24]
sebastien.renaut
sequence_alignment [2014/11/17 13:27]
sebastien.renaut
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   *[[http://​www.ebi.ac.uk/​Tools/​msa/​clustalw2/​|clustalW2]]. Multiple Sequence Alignment. Alternative to MUSCLE   *[[http://​www.ebi.ac.uk/​Tools/​msa/​clustalw2/​|clustalW2]]. Multiple Sequence Alignment. Alternative to MUSCLE
   *[[http://​www.megasoftware.net/​|MEGA]]. integrated tool for conducting sequence alignment, inferring phylogenetic trees, estimating divergence time. Fantastic GUI.   *[[http://​www.megasoftware.net/​|MEGA]]. integrated tool for conducting sequence alignment, inferring phylogenetic trees, estimating divergence time. Fantastic GUI.
 +  *[[http://​www.mbio.ncsu.edu/​bioedit/​bioedit.html|BioEdit]] Sequence Alignment Editor (for PC only) with various molecular evolution functions. Nice GUI. Use to be one of the leading program. Outdated (?) and no longer supported.
   *Most proprietary software (Sequencher,​ Geneious, CLC Genomics) will also permit multiple sequence alignments.   *Most proprietary software (Sequencher,​ Geneious, CLC Genomics) will also permit multiple sequence alignments.