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r_symposium_2019 [2019/10/11 20:36] ph.pereirabraga |
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<WRAP group> | <WRAP group> | ||
<WRAP rightalign half column 47%> | <WRAP rightalign half column 47%> | ||
- | **Le 3e Colloque R du CSBQ aura lieu le 10, 11 et 12 octobre 2019 à la Reserve Naturelle Gault** | + | **Le 3e Colloque R du CSBQ a eu lieu le 10, 11 et 12 octobre 2019 à la Reserve Naturelle Gault** |
</WRAP> | </WRAP> | ||
<WRAP half column 48%> | <WRAP half column 48%> | ||
- | **The 3rd QCBS R symposium will be held from October 10th to 12th 2019 at the Gault Nature Reserve** | + | **The 3rd QCBS R symposium was held from October 10th to 12th 2019 at the Gault Nature Reserve** |
</WRAP> | </WRAP> | ||
<WRAP clear></WRAP> | <WRAP clear></WRAP> | ||
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<WRAP group> | <WRAP group> | ||
<WRAP half column 48%> | <WRAP half column 48%> | ||
- | Pour la 3ème année consécutive, l'équipe d'ateliers R du CSBQ organisera l'**edition 2019 du Colloque R du CSBQ**. | + | Pour la 3ème année consécutive, l'équipe d'ateliers R du CSBQ a organisé l'**edition 2019 du Colloque R du CSBQ**. |
L'objectif du Colloque R du CSBQ est de fournir un cadre structuré pour la discussion et l'échange d'idées entre des participants et des présentateurs d'ateliers concernant l'utilisation de R dans les analyses de la biodiversité. Pour cela, nous fournissons un lieu d’enseignement et de participation à une série d’ateliers R avancés qui ne sont pas couverts par la série annuelle d’ateliers R du CSBQ. | L'objectif du Colloque R du CSBQ est de fournir un cadre structuré pour la discussion et l'échange d'idées entre des participants et des présentateurs d'ateliers concernant l'utilisation de R dans les analyses de la biodiversité. Pour cela, nous fournissons un lieu d’enseignement et de participation à une série d’ateliers R avancés qui ne sont pas couverts par la série annuelle d’ateliers R du CSBQ. | ||
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<WRAP half column 47%> | <WRAP half column 47%> | ||
- | For the 3rd consecutive year, the QCBS R Workshop cohort will hold the **2019 edition of the QCBS R Symposium**. | + | For the 3rd consecutive year, the QCBS R Workshop cohort held the **2019 edition of the QCBS R Symposium**. |
The purpose of the QCBS R Symposium is to provide a structured framework for the discussion and exchange of ideas between participants and presenter in the application of biodiversity science analyses using R. For this, we provide a venue for teaching and participation in a series of advanced R workshops that are not offered during the annual QCBS R Workshop Series. | The purpose of the QCBS R Symposium is to provide a structured framework for the discussion and exchange of ideas between participants and presenter in the application of biodiversity science analyses using R. For this, we provide a venue for teaching and participation in a series of advanced R workshops that are not offered during the annual QCBS R Workshop Series. | ||
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<WRAP group> | <WRAP group> | ||
<WRAP half column 48%> | <WRAP half column 48%> | ||
- | Le 3e Colloque R du CSBQ aura lieu le **10, 11 et 12 octobre 2019** à la [[https://www.mcgill.ca/gault/|Reserve Naturelle Gault]], à la municipalité de Mont-Saint-Hilaire, Monterégie, Québec. | + | Le 3e Colloque R du CSBQ a eu lieu le **10, 11 et 12 octobre 2019** à la [[https://www.mcgill.ca/gault/|Reserve Naturelle Gault]], à la municipalité de Mont-Saint-Hilaire, Monterégie, Québec. |
</WRAP> | </WRAP> | ||
<WRAP half column 47%> | <WRAP half column 47%> | ||
- | The 3rd QCBS R Symposium will be held from **October 10th to 12th 2019** at the [[https://www.mcgill.ca/gault/|Gault Nature Reserve]], in the municipality of Mont-Saint-Hilaire, Monterégie, Québec. | + | The 3rd QCBS R Symposium was held from **October 10th to 12th 2019** at the [[https://www.mcgill.ca/gault/|Gault Nature Reserve]], in the municipality of Mont-Saint-Hilaire, Monterégie, Québec. |
</WRAP> | </WRAP> | ||
<WRAP clear></WRAP> | <WRAP clear></WRAP> | ||
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<WRAP group> | <WRAP group> | ||
<WRAP half column 48%> | <WRAP half column 48%> | ||
- | Les frais d'inscription au **3ème Colloque R du CSBQ** est de: | + | Les frais d'inscription au **3ème Colloque R du CSBQ** a été de: |
* **25 $** pour les **membres du CSBQ**, et; | * **25 $** pour les **membres du CSBQ**, et; | ||
* **150 $** pour les **//non-membres// du CSBQ**. | * **150 $** pour les **//non-membres// du CSBQ**. | ||
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</WRAP> | </WRAP> | ||
<WRAP half column 47%> | <WRAP half column 47%> | ||
- | The attendance fee for the **3rd QCBS R Symposium** is: | + | The attendance fee for the **3rd QCBS R Symposium** was: |
* **25 $** for **QCBS members**, and; | * **25 $** for **QCBS members**, and; | ||
* **150 $** for **QCBS //non-members//**. | * **150 $** for **QCBS //non-members//**. | ||
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<WRAP group> | <WRAP group> | ||
<WRAP half column 48%> | <WRAP half column 48%> | ||
- | Les inscriptions pour le 3ème Colloque R du CSBQ sont **OUVERTES**. \\ | + | Les inscriptions pour le 3ème Colloque R du CSBQ sont **FERMÉS**. \\ |
- | + | ||
- | **[[https://registration.qcbs.ca/fr/colloque-r-2019|INSCRIVEZ-VOUS MAINTENANT!]]** | + | |
</WRAP> | </WRAP> | ||
<WRAP half column 47%> | <WRAP half column 47%> | ||
- | Registration for the 3rd QCBS R Symposium is **OPEN**.\\ | + | Registration for the 3rd QCBS R Symposium are **CLOSED**.\\ |
- | **[[https://registration.qcbs.ca/r-symposium-2019|REGISTER NOW!]]** | ||
</WRAP> | </WRAP> | ||
<WRAP clear></WRAP> | <WRAP clear></WRAP> | ||
- | ==== Programmation préliminaire | Preliminary program ==== | + | ==== Programmation | Preliminary ==== |
<WRAP group> | <WRAP group> | ||
<WRAP half column 48%> | <WRAP half column 48%> | ||
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**8:00** - //Déjeuner// \\ | **8:00** - //Déjeuner// \\ | ||
**9:00** - **Touchdown your research!** (2h) \\ | **9:00** - **Touchdown your research!** (2h) \\ | ||
- | **12:00** - //Dîner// \\ | + | **11:00** - //Temps libre// \\ |
- | **13:00** - //Temps libre// \\ | + | **12:45** - //Dîner// \\ |
**14:00** - Retour à //Montréal// \\ | **14:00** - Retour à //Montréal// \\ | ||
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**8:00** - //Breakfast// \\ | **8:00** - //Breakfast// \\ | ||
**9:00** - **Touchdown your research!** (2h) \\ | **9:00** - **Touchdown your research!** (2h) \\ | ||
- | **12:00** - //Lunch// \\ | + | **11:00** - //Free time// \\ |
- | **13:00** - //Free time// \\ | + | **12:45** - //Lunch// \\ |
**14:00** - Return to //Montréal// \\ | **14:00** - Return to //Montréal// \\ | ||
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# Load all required libraries at once | # Load all required libraries at once | ||
lapply(required.libraries, require, character.only = TRUE) | lapply(required.libraries, require, character.only = TRUE) | ||
- | |||
- | ### Install missing libraries | ||
- | source("https://bioconductor.org/biocLite.R") | ||
- | biocLite("ggtree") | ||
- | # if your R version is 3.5 or greater: | ||
- | install.packages("BiocManager") | ||
- | BiocManager::install("ggtree") | ||
- | set.seed(1) | ||
# Download files from Marc Cadotte's and Jonathan Davies' book | # Download files from Marc Cadotte's and Jonathan Davies' book | ||
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<WRAP group> | <WRAP group> | ||
<WRAP half column 48%> | <WRAP half column 48%> | ||
- | Le 3ème Colloque R du CSBQ réunira des étudiants à la maîtrise et au doctorat et des stagiaires postdoctoraux associés au CSBQ qui présenteront des concepts et l’application de méthodes pertinents pour les scientifiques travaillant dans plusieurs domaines liés à la recherche sur la biodiversité. | + | Le 3ème Colloque R du CSBQ a reuni des étudiants à la maîtrise et au doctorat et des stagiaires postdoctoraux associés au CSBQ qui présenteront des concepts et l’application de méthodes pertinents pour les scientifiques travaillant dans plusieurs domaines liés à la recherche sur la biodiversité. |
</WRAP> | </WRAP> | ||
<WRAP half column 47%> | <WRAP half column 47%> | ||
- | The 3rd QCBS R Symposium will have QCBS-associated graduate students and postdoctoral fellows presenting over the concepts and the application of methods addressing relevant questions and content for scientists working in biodiversity research. | + | The 3rd QCBS R Symposium had QCBS-associated graduate students and postdoctoral fellows presenting over the concepts and the application of methods addressing relevant questions and content for scientists working in biodiversity research. |
</WRAP> | </WRAP> | ||
<WRAP clear></WRAP> | <WRAP clear></WRAP> | ||
=== Basics of effective and reproducible data visualization === | === Basics of effective and reproducible data visualization === | ||
- | //par// | //by// **Tania Maxwell** (Université Laval | [[https://twitter.com/tania_maxwell7|{{https://img.icons8.com/android/24/000000/twitter.png?22x22}}]]) | + | //par// | //by// **Tania Maxwell** (Université Laval | [[https://twitter.com/tania_maxwell7|{{https://img.icons8.com/android/24/000000/twitter.png?22x22}}]]) (**Workshop Material** | **Presentation**) |
<WRAP group> | <WRAP group> | ||
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//par// | //by// **Steve Vissault** (Université de Sherbrooke | [[https://github.com/SteveViss|{{https://github.githubassets.com/images/modules/logos_page/GitHub-Mark.png?25x25}}]] | [[https://twitter.com/SVissault|{{https://img.icons8.com/android/24/000000/twitter.png?22x22}}]]) & **Marie-Hélène Brice** (Université de Montréal | [[https://github.com/mhbrice|{{https://github.githubassets.com/images/modules/logos_page/GitHub-Mark.png?25x25}}]] | [[https://twitter.com/mariehbrice|{{https://img.icons8.com/android/24/000000/twitter.png?22x22}}]]) | //par// | //by// **Steve Vissault** (Université de Sherbrooke | [[https://github.com/SteveViss|{{https://github.githubassets.com/images/modules/logos_page/GitHub-Mark.png?25x25}}]] | [[https://twitter.com/SVissault|{{https://img.icons8.com/android/24/000000/twitter.png?22x22}}]]) & **Marie-Hélène Brice** (Université de Montréal | [[https://github.com/mhbrice|{{https://github.githubassets.com/images/modules/logos_page/GitHub-Mark.png?25x25}}]] | [[https://twitter.com/mariehbrice|{{https://img.icons8.com/android/24/000000/twitter.png?22x22}}]]) | ||
+ | (**[[https://insileco.github.io/ResearchDown/#requirements|Workshop Material]]** | **[[https://insileco.github.io/ResearchDown/#1|Presentation]]**) | ||
<WRAP group> | <WRAP group> | ||
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</WRAP> | </WRAP> | ||
<WRAP clear></WRAP> | <WRAP clear></WRAP> | ||
- | |||
=== Mining species-level biodiversity information from published literature === | === Mining species-level biodiversity information from published literature === | ||
- | //par// | //by// **Gabriel Muñoz** (Concordia University | [[https://github.com/fgabriel1891|{{https://github.githubassets.com/images/modules/logos_page/GitHub-Mark.png?25x25}}]] | [[https://twitter.com/NasuaResearch|{{https://img.icons8.com/android/24/000000/twitter.png?22x22}}]]) | + | //par// | //by// **Gabriel Muñoz** (Concordia University | [[https://github.com/fgabriel1891|{{https://github.githubassets.com/images/modules/logos_page/GitHub-Mark.png?25x25}}]] | [[https://twitter.com/NasuaResearch|{{https://img.icons8.com/android/24/000000/twitter.png?22x22}}]]) |
+ | |||
+ | (**[[ToBeIncluded|Workshop Material]]** | **[[ToBeIncluded|Presentation]]**) | ||
<WRAP group> | <WRAP group> | ||
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=== Community Phylogenetics: linking community ecology and evolutionary biology to your programming skills === | === Community Phylogenetics: linking community ecology and evolutionary biology to your programming skills === | ||
//par// | //by// **Pedro Henrique P. Braga** (Concordia University | [[https://github.com/pedrohbraga|{{https://github.githubassets.com/images/modules/logos_page/GitHub-Mark.png?25x25}}]] | [[https://twitter.com/pedrohp_braga|{{https://img.icons8.com/android/24/000000/twitter.png?22x22}}]]) & **Katherine Hébert** (Université de Sherbrooke | [[https://github.com/katherinehebert|{{https://github.githubassets.com/images/modules/logos_page/GitHub-Mark.png?25x25}}]] | [[https://twitter.com/hebert_kat|{{https://img.icons8.com/android/24/000000/twitter.png?22x22}}]]) | //par// | //by// **Pedro Henrique P. Braga** (Concordia University | [[https://github.com/pedrohbraga|{{https://github.githubassets.com/images/modules/logos_page/GitHub-Mark.png?25x25}}]] | [[https://twitter.com/pedrohp_braga|{{https://img.icons8.com/android/24/000000/twitter.png?22x22}}]]) & **Katherine Hébert** (Université de Sherbrooke | [[https://github.com/katherinehebert|{{https://github.githubassets.com/images/modules/logos_page/GitHub-Mark.png?25x25}}]] | [[https://twitter.com/hebert_kat|{{https://img.icons8.com/android/24/000000/twitter.png?22x22}}]]) | ||
+ | |||
+ | (**[[https://pedrohbraga.github.io/CommunityPhylogenetics-Workshop/CommunityPhylogenetics-Workshop.html|Workshop Material]]**) | ||
<WRAP group> | <WRAP group> | ||
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</WRAP> | </WRAP> | ||
<WRAP clear></WRAP> | <WRAP clear></WRAP> | ||
- | |||
- | === And, another workshop to come! === | ||
===== Call for Workshop Proposals | Appel à la proposition d'ateliers ===== | ===== Call for Workshop Proposals | Appel à la proposition d'ateliers ===== |