https://wiki.qcbs.ca/ 2026-08-24T19:25:22+0000 https://wiki.qcbs.ca/ https://wiki.qcbs.ca/lib/tpl/LotarProject-dokuwiki-template-bootstrap3-fef63cb/images/favicon.ico text/html 2013-08-23T17:57:38+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/advancedgis?rev=1377280658&do=diff Installing PostGIS: For Ubuntu users: sudo apt-add-repository ppa:ubuntugis/ubuntugis-unstable sudo apt-get update sudo apt-get install postgis sudo -u postgres createuser --superuser $USER sudo -u postgres psql \password username; CREATE DATABASE username; CREATE DATABASE workshop; \c workshop; CREATE EXTENSION postgis; CREATE EXTENSION postgis_topology; Insert Code text/html 2012-02-02T20:51:25+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/aflp_454seq_for_pop_structure?rev=1328215885&do=diff AFLP-like step with 454 sequencing for studying population structure In 2011, Simon Joly, researcher at the Jardin Botanique de Montréal, set up an experiment with Annie Archambault research professional at the QCBS, using one of the high throughput (or next-generation) sequencing methods to study ginseng (Panax quinquefolius text/html 2018-03-05T16:45:11+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/atelier_comm?rev=1520268311&do=diff <http://qcbs.ca/fr/> Développé par : Pierre Legagneux, professionnel de recherche du CSBQ. Mise à jour par Sébastien Renaut en Novembre 2017. Dernière mise à jour : 16 Novembre 2017 Présentation PowerPoint - Novembre 2017 Atelier de communication scientifique -- Communication écrite Résumé Vous avez terminé vos analyses, les résultats sont conformes (ou pas !) à vos hypothèses initiales et vous désirez publier vos résultats dans une revue scientifique ? Comment valoriser au mieux tout ce… text/html 2014-11-03T14:12:48+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/basic_tools_for_ngs_sequence_alignment_and_variant_snp_calling?rev=1415023968&do=diff NGS sequence alignment and variant calling ###sequence alignment gatk bwa bowtie ###variant calling samtools vcftools gatk ###GBS and RAD data tassel (uneak) stacks pyrad ##all in one proprietary software geneious clc genomics text/html 2012-05-17T19:40:24+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/batch_blast_to_the_ncbi_online_database?rev=1337283624&do=diff In May 2012 text/html 2024-03-11T16:51:52+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/bdenligne?rev=1710175912&do=diff Introduction à la gestion des bases de données avec des logiciels libres Atelier offert par Guillaume Larocque, professionnel de recherche au CSBQ. Presentation Lien vers la présentation Prezi Ressources utiles * PostgreSQL Reference Manual * Beginning databases with PostgreSQL * PostgreSQL wiki * PostgreSQL Tutorial * SQL Murder Mystery Installation de PostgreSQL Sur Windows et Mac * Visitez la page de text/html 2024-03-11T16:25:17+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/bdlibre?rev=1710174317&do=diff Introduction à la gestion des bases de données avec des logiciels libres Atelier offert par Guillaume Larocque, professionnel de recherche au CSBQ. Presentation Lien vers la présentation Prezi Lien vers la présentation simultanée Ressources utiles * PostgreSQL Reference Manual * Beginning databases with PostgreSQL * PostgreSQL wiki * PGSearch pour chercher des sites web en lien avec PostgreSQL. Installation de PostgreSQL Sur Windows et Mac * Visitez la page de text/html 2014-04-11T19:45:46+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/bdlibre_installation?rev=1397245546&do=diff Installation de PostgreSQL Sur Windows et Mac * Visitez la page de EntrepriseDB site et téléchargez la version appropriée pour votre plate-forme. Choisissez la version 64 bits. * Éxécutez le fichier et suivez les étapes d'installation en acceptant les options par défaut. text/html 2013-07-23T19:16:47+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/biodiversityscience?rev=1374607007&do=diff Bibliographic resources for biodiversity science * Online books from Springer Available if your library is a subscriber. You can easily perform custom searches for books in biodiversity science or ecology., for example. text/html 2013-08-08T19:21:26+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/bioinformatic_tools_to_detect_microsatellites_loci_from_genomic_data?rev=1375989686&do=diff Mining genomic data for tandem repeats Abstract Microsatellites are short sequences repeated in tandem in a genome, where the unit is generally from 2 to 6 base pairs (bp). These genomic regions tend to rapidly accumulate mutations in the form of duplication and deletion of repeat units, due to specific molecular mechanisms such as replication slippage, unequal crossing-over, unequal sister chromatide exchange and slipped-strand mis-pairing. Subsequent point mutation will also occur during DNA… text/html 2018-12-31T16:23:10+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/biome?rev=1546273390&do=diff BIOinformatics for MEtabarcoding Description Atelier BIOME workshop 23->25/10/2018 The aim of this 3 day QCBS workshop will be to learn the standard bioinformatics tools needed in eDNA metabarcoding projects. The wokshop will be led by an invited speaker - Benjamin Callahan, professor at the North Carolina State University ( text/html 2015-04-14T16:30:54+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/blast?rev=1429029054&do=diff BLAST (Basic Local Alignment Search Tool) * Basic notions in sequence similarity search using BLAST programs * Standalone BLAST on a local database, and tips on parsing large BLAST output files * Commandline BLAST (working group 2012) text/html 2015-04-14T16:40:59+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/blast_introduction?rev=1429029659&do=diff Comparing genes and genomes using bioinformatics The BLAST program and its specialized derivative programs (Primer-BLAST, conserved domains, vector contamination, Align two sequences, Global Sequence Alignment Tool, WGS sequences) may some of the most widely used tools in bioinformatics. The BLAST algorithm text/html 2013-09-16T12:33:33+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/buildingaphylogeny?rev=1379334813&do=diff Basic steps for building a phylogenetic tree A QCBS workshop given by Annie Archambault, to the QCBS students and researchers Sign up on this page of the QCBS website. About the workshop * The target audience is researchers and students who will have to build a phylogenetic tree for their coming projects, but who don't quite know which program or which parameter to use. text/html 2016-04-15T18:10:11+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/comm_sci?rev=1460743811&do=diff Comment donner une bonne présentation scientifique <http://qcbs.ca/fr/> Développé par : Cédric Frenette Dussault, PhD Dernière mise à jour : 15 avril 2016 Résumé Prendre la parole lors d'un colloque, d'un séminaire départemental ou d'un cours universitaire fait partie des tâches courantes des chercheurs. On ne le réalise pas toujours, mais le processus débutant par la réflexion d'une structure de présentation et se terminant par la période de questions suivant une présentation demande beau… text/html 2016-04-08T14:39:46+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/comm_viz?rev=1460126386&do=diff Test text/html 2015-04-14T16:30:11+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/commandline_remote_blast?rev=1429029011&do=diff Sequence similarity search remotely by batch, on the online public NCBI databases When batch blast is useful Comparing many sequences (queries) at a time to the NCBI public databases saves time compared to performing repeated searches for each different queries, and has the advantage of comparing to the most up to date version of the public databases. It is unfortunately not possible to perform this task directly from the online access of the various BLAST programs offered on the text/html 2018-03-08T19:59:57+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/commsci?rev=1520539197&do=diff Ateliers de communication scientifique | Science Communication Workshops Information sur les ateliers en anglais est trouvée en dessous. Information on the English language workshops follows below. Nouvelle série de deux ateliers visant à : * text/html 2015-09-24T06:52:08+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/derby?rev=1443077528&do=diff QCBS Research Derby 2015 The time has come to register for the QCBS Student Biodiversity Research Derby, which will be held from the evening of Friday, Nov. 20 to mid-day Sunday, Nov. 22 at the Gault Nature Reserve (Mt. St-Hilaire)! The Research Derby will be an opportunity for QCBS students and post-docs to work together in small teams (~5 people) during an intensive weekend of science. Participants will arrive after dinner on the Friday, split into teams and receive information about the data… text/html 2012-03-02T19:52:32+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/donnesgsqc?rev=1330717952&do=diff Où trouver des donnés géospatiales couvrant le Québec? Gratuites * Geoconnexions est un portail rassemblant des centaines de sources de données géospatiales. * Geobase * Geogratis * Système national d’information forestière-NFIS-SNIF - Ce site permet de télécharger les données de EOSD-OTTD et des données liées aux régions protégées du Canada. text/html 2015-01-12T16:31:44+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/eduroam?rev=1421080304&do=diff Acccessing the Eduroam network eduroam (education roaming) is the secure, world-wide roaming access service developed for the international research and education community. Once configured properly, you can use it to get WIFI access at any partner university. Look below to know which credentials you need to use to get access to eduroam while visiting a partner university. text/html 2015-03-23T15:19:50+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/eduroam_fr?rev=1427123990&do=diff Comment accéder au réseau Eduroam eduroam (education roaming) est un service sécuritaire à l'échelle internationale développé pour étudiants, professeurs et chercheurs. Une fois configuré adéquatement, Eduroam vous permet d'utiliser les réseaux sans-fil (WIFI) dans n'importe quelle des universités partenaires. Suivez simplement les directives mentionnés pour votre université afin de savoir quel nom d'usager utiliser. text/html 2010-12-08T19:07:43+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/field_sampling?rev=1291835263&do=diff Methods for field sampling text/html 2014-10-10T12:59:34+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/formulairesweb?rev=1412945974&do=diff Principes de bases pour la création de formulaires web Centre de la science de la biodiversité du Québec Guillaume Larocque, Professionnel de recherche. (guillaume.larocque@mcgill.ca) Université du Québec à Rimouski. 10 octobre 2014. * text/html 2017-05-30T14:30:36+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/geomatics?rev=1496154636&do=diff Geomatics for biodiversity Online resources for geomatics in ecology and biology Software * ESRI Home of the popular ArcGIS and Arc/Info software. * QGIS is a free, open source GIS program working under Windows, MacOS X and Linux. It can be highly customized with Python scripts and can be used to call GRASS functions. It works with rasters and vectors and can work seamlessly with shapefiles and multiple other file formats. text/html 2025-12-02T15:39:02+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/geostatistics?rev=1764689942&do=diff Introduction to geostatistics with R Online. Instructor: Guillaume Larocque (glaroc@gmail.com). Presentation Prezi presentation R Code [Click here to download the zip file containing the scripts and the datasets that will be used during the workshop.] Please extract this zip archive to an easily accessible folder on your computer. Ressources Books * Spatial Data Science - With applications in R. - Provides a good overview of spatial statistical tools in R. Contains a good chapter on… text/html 2020-02-26T19:26:35+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/geostats?rev=1582745195&do=diff Introduction à la géostatistique avec R Guillaume Larocque (glaroc@gmail.com), 27 février 2020. Université de Montréal. Présentation Présentation sur Prezi Présentation simultanée Livres * Applied spatial data analysis with R, Bivand, Pebesma et Gómez-Rubio. - Bon survol des outils d'analyse spatiale dans R et un bon chapitre sur la géostatistique. text/html 2024-12-04T19:27:45+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/graphics?rev=1733340465&do=diff Introduction to graphic design and image manipulation with open source tools Offered by Guillaume Larocque, Quebec Centre for Biodiversity Science. Online. Link to Prezi presentation. GIMP To install GIMP, go to this site and follow instructions. To put GIMP in single window mode, click on Window>Single Window Mode, and restart GIMP. text/html 2023-04-12T17:20:19+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/graphiques?rev=1681320019&do=diff Introduction au design graphique et à la manipulation d'images avec Inkscape et GIMP Atelier offert par Guillaume Larocque, Centre de la science de la biodiversité du Québec. Avril 2023. Lien vers la présentation Prezi. GIMP Pour installer GIMP visitez ce site et suivez les instructions. text/html 2013-04-30T17:16:38+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/guide_to_amplicon_sequencing_experiment?rev=1367342198&do=diff From Soil to Sequence Submission - A guide to amplicon sequencing experiments A guide prepare by Terrence Bell, postdoctoral fellow at projet GenoRem, Institut de recherche en biologie végétale Terminology note: the sequence data output by massively parallel sequencing instruments (Roche 454, Illumina HiSeq, IonTorrent…) are commonly termed “reads”. In this guide, “sequences” and “reads” are synonymous. text/html 2012-01-23T13:54:31+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/high_throughput_sequencing_for_genetic_diversity?rev=1327326871&do=diff High throughput sequencing Dye terminator sequencing has long been the main method for providing sequence data, but it has the disadvantage of being time consuming and expensive when a massive amount of data needs to be analysed. A revolution in the field of sequencing began at the turn of the 21st century, with the introduction of sequence by synthesis methods text/html 2012-11-20T18:28:01+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/human_ethics?rev=1353436081&do=diff QCBS HUMAN ETHICS FOR BIODIVERSITY SCIENCE WORKSHOP Thank you for your participation in our first ever workshop on human ethics. We hope to improve this workshop to make it more relevant to you so please enter comments on the following form. text/html 2012-11-06T17:14:02+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/installmysql?rev=1352222042&do=diff Installing MySQL Please follow all these steps: * Visit the Download section of the MySQL website and download the version of MySQL Community Server appropriate for your platform (Windows users: choose the 32 bit version!). Note that you DO NOT have to register. Simply click on “No thanks, just take me to the downloads! text/html 2019-11-12T22:17:22+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/introgis?rev=1573597042&do=diff Introduction to Open Source Geographic information systems with QGIS and GRASS Quebec Centre for Biodiversity Science, <https://qcbs.ca> Guillaume Larocque, Research Professional. (guillaume.larocque@mcgill.ca) November 12 and 13, 2019. McGill University Presentation text/html 2016-10-12T19:39:04+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/introqgis?rev=1476301144&do=diff Introduction aux systèmes d'information géographique avec QGIS Centre de la science de la biodiversité du Québec Guillaume Larocque, Professionnel de recherche. (guillaume.larocque@mcgill.ca) 12 octobre 2016, École Polytechnique, Université de Montréal. text/html 2020-04-03T13:04:20+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/introsig?rev=1585919060&do=diff Introduction aux systèmes d'information géographique avec QGIS et GRASS Centre de la science de la biodiversité du Québec Guillaume Larocque, Professionnel de recherche. (guillaume.larocque@mcgill.ca) Présentation Lien vers la présentation Prezi Lien vers la présentation Prezi simultanée 1 - Installation de QGIS et GRASS text/html 2016-01-25T22:05:21+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/journal_club_-_ecologie_evolution_genetique?rev=1453759521&do=diff Des rencontres hebdomadaires, organisées par Sébastien renaut et Simon joly, au jardin botanique de Montréal. Les articles portent habituellement sur des questions d'écologie moléculaire, phylogénétique, spéciation et génétique. Si vous voulez suggérer un article, n'hésitez pas! text/html 2011-05-19T17:33:24+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/large_equipment?rev=1305826404&do=diff Comparing laboratory equipment is complicated by the fact that it can be difficult to collect and compare specifications from different manufacturers and suppliers. In 2010 and 2011, we had to gather specifications to elaborate a “Request for quotation text/html 2011-05-12T18:57:03+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/large_ultralow_temperature_freezers?rev=1305226623&do=diff In our search, we identified four models of large ultralow (-86 C) temperature freezers that are above the basic laboratory standards, but not of pharmaceutical grade. We compared the characteristics available from the manufacturers' websites and/or communicated to us by the companies' representatives. text/html 2019-01-22T20:00:44+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/lmm.workshop?rev=1548187244&do=diff Atelier de formation sur les modèles linéaires à effets mixtes avec R | Linear mixed model workshops in R Organisation/Organization: Kate Laskowski, Pierre-Olivier Montiglio, Mélodie de Jaham & Marc-Olivier Beausoleil. Dr. Kate Laskowski (IGB, Berlin) a donné un atelier de 6 jours sur les modèles mixtes avec R. C'est un atelier de 3 jours de leçons en anglais, suivis de 3 jours de travail supervisé sur les données des participants à l'atelier. Participer à l’atelier nécessite un ordinateur… text/html 2017-11-01T11:45:17+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/meta-analysis-workshop?rev=1509536717&do=diff QCBS meta-analysis workshop *Documents* Meta-Analysis usefull links CRAN Meta-analysis metafor website Book: Handbook of Meta-analysis in Ecology and Evolution Identification, selection, data extraction, coding and management of literature [ PP Elizabeth] # Steve talk 1 # Steve talk 2 # Steve talk 3 Effect size metrics for meta-analyses [ PP Sacha] Statistical modeling: maximum likelihood approach text/html 2014-11-13T20:54:16+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/methodes_en_biologie_moleculaire?rev=1415912056&do=diff Different molecular biology topics and methods useful in biodiversity science. In the lab * Setting up a laboratory for molecular biology * Good practices for sample collection; and DNA extraction methods * Quantitative real time PCR, usually from cDNA * High throughput sequencing for genetic diversity At the computer * Basic notions in sequence similarity search using BLAST programs * Standalone BLAST on a local database, and tips on parsing large BLAST output files * Commandline… text/html 2019-07-11T21:26:14+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/microecoconf?rev=1562880374&do=diff Série de Conférences en Écologie Microbienne - Microbial Ecology Seminar Series Êtes-vous un•e passionné•e d’écologie microbienne ne se sentant pas représenté•e par les séminaires de votre département ? Aimeriez-vous faire la rencontre de gens de votre domaine en assistant à des conférences sur le sujet à Montréal ? Voici une nouvelle initiative menée par des étudiant•es-chercheur•es du CSBQ qui vise à donner de la visibilité aux scientifiques locaux et internationaux de tout acabit en éco… text/html 2020-02-16T23:43:59+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/microecoconf2?rev=1581896639&do=diff Deuxième Série de Conférences en Écologie Microbienne - Second Series of Microbial Ecology Seminars Êtes-vous un•e passionné•e d’écologie microbienne ne se sentant pas représenté•e par les séminaires de votre département ? Aimeriez-vous faire la rencontre de gens de votre domaine en assistant à des conférences sur le sujet à Montréal ? En 2018, nous avons lancé une série de séminaires qui vise à donner de la visibilité aux scientifiques locaux et internationaux en écologie microbienne. Ces sé… text/html 2016-06-07T17:26:17+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/midi_numerique?rev=1465320377&do=diff EN PAUSE POUR L'ÉTÉ. DE RETOUR EN SEPTEMBRE 2016 Midi numérique * Rencontres mensuelles afin de discuter des nouvelles approches numériques, statistiques, quantitatives, bioinformatiques, ..., et leurs applications en biologie. * Organisé par text/html 2011-06-02T14:17:49+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/multipurpose_tabletop_centrifuge?rev=1307024269&do=diff Two models of multipurpose centrifuges were compared, from two major suppliers. The centrifuge needed to be refrigerated, to have high tube capacity, to spin microplates (shallowell and deepwell), 1.5 ml tubes, and 50 ml tubes. Eppendorf 5810R (VWR) ST 40R Refrigerated 120V 60H Refrigirated temperature text/html 2014-04-01T20:56:30+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/mysql?rev=1396385790&do=diff Introduction to Database Management Systems with MySQL Workshop given by Guillaume Larocque, research professional at the QCBS, at McGill University on November 2 and 9, 2012. Link to Prezi presentation - Simultaneous presentation Link to Prezi presentation Useful resources * MySQL 5.5. Reference Manual * Common MySQL Queries - Very useful website with hundreds of example MySQL commands. text/html 2013-10-08T12:56:00+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/mysql_installation?rev=1381236960&do=diff Installation de MySQL * Visitez la section téléchargements du site de MySQL et téléchargez la version de MySQL Community Server ou MySQL Installer appropriée pour votre ordinateur (Utilisateurs Windows: choisissez la version 32 bits de MySQL Installer). Notez que vous n'avez pas à vous inscrire. Cliquez simplement sur text/html 2013-10-10T13:46:22+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/mysqlfr?rev=1381412782&do=diff Introduction à la gestion des bases de données avec MySQL Atelier offert par Guillaume Larocque, professionnel de recherche au CSBQ, à l'Université du Québec à Rimouski, octobre 2013. Presentation Lien vers la présentation Prezi Lien vers la présentation simultanée Ressources utiles * Manuel d'utilisateur de MySQL 5.7. * Manuel d'utilisation de MySQL 5.0 en français * Requêtes MySQL fréquentes - Site très utile avec des centaines d'exemples de commandes MySQL. text/html 2013-02-04T17:20:31+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/mysqlinstall?rev=1359998431&do=diff Installing MySQL * Visit the Download section of the MySQL website and download the version of MySQL Community Server appropriate for your platform (Windows users: choose the 32 bit version!). Note that you DO NOT have to register. Simply click on “No thanks, just take me to the downloads! text/html 2014-11-26T14:58:01+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/ngs_sequence_alignment_and_variant_calling?rev=1417013881&do=diff Bioinformatics Tools for Analyzing High Throughput Sequencing (NGS) Data * Commonly used tools in bioinformatics analyses of NGS dataset. Although, a lot of these tools can be used for other purposes too (such as microarray data, Sanger sequencing, proteomics). text/html 2010-12-08T18:42:56+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/nouvelle_page?rev=1291833776&do=diff Geomatics for biodiversity Online resources for geomatics in ecology and biology Software Quantum GIS is a free, open source GIS program working under Windows, MacOS and Linux. It can be highly customized with Python scripts and can be used to call GRASS functions. It works with rasters and vectors and can work seamlessly with shapefiles and multiple other file formats. text/html 2012-04-16T15:33:54+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/online_websites_and_tools_for_biodiversity_data_sharing?rev=1334590434&do=diff Global biodiversity data infrastructures * DataOne - By creating an infrastructure of people, technology, and standards to support the full life cycle of biological, ecological, and environmental data and tools that enable universal access, DataONE will accelerate use of Earth observational data in research, education and decision-making. Useful tools are presented on this text/html 2025-04-08T18:34:03+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/onlinedb?rev=1744137243&do=diff Introduction to database management with open source tools Workshop offered by Guillaume Larocque (guillaume.larocque@mcgill.ca), research professional at the Quebec Centre for Biodiversity Science. Link to Prezi presentation Useful resources * PostgreSQL Reference Manual * PostgreSQL Tutorial * Beginning databases with PostgreSQL * PostgreSQL wiki * SQL Murder Mystery. Solve a murder mystery while practising your SQL skills. * PgModeler - Tool to design databases and create en… text/html 2025-03-11T15:56:25+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/onlinegis?rev=1741708585&do=diff Introduction to Open Source Geographic Information Systems with QGIS Quebec Centre for Biodiversity Science, <https://qcbs.ca> Guillaume Larocque, Research Professional. (guillaume.larocque@mcgill.ca) March 2025. Online. Presentation Link to presentation on Prezi 1 - Installation of QGIS and GRASS text/html 2019-04-30T19:39:32+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/opendb?rev=1556653172&do=diff Introduction to database management with open source tools Workshop offered by Guillaume Larocque (guillaume.larocque@mcgill.ca), research professional at the Quebec Centre for Biodiversity Science. Link to Prezi presentation [PDF version of the Prezi presentation] Useful resources * PostgreSQL Reference Manual * Beginning databases with PostgreSQL * PostgreSQL wiki * PGSearch to search PostgreSQL related websites and lists. Installation of PostgreSQL On Windows and Mac text/html 2014-04-04T18:52:34+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/opendb_install?rev=1396637554&do=diff Installation of PostgreSQL On Windows and Mac * Visit the EntrepriseDB site and download the version appropriate for your platform. Opt to download the 64bit version. * Execute the file and go through the installation steps, accepting default options. * When prompted, choose an appropriate password for the postgres user and write this password down. text/html 2013-11-27T16:27:55+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/osgis?rev=1385569675&do=diff Introduction to Open Source Geographic information systems: QGIS and GRASS Quebec Centre for Biodiversity Science, <http://qcbs.ca> Guillaume Larocque, Research Professional. (guillaume.larocque@mcgill.ca) **THIS PAGE WAS DONE FOR AN OLDER VERSION OF THE WORKSHOP ** text/html 2013-10-04T15:59:16+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/osgisfr?rev=1380902356&do=diff Introduction aux systèmes d'information géographique libres : QGIS and GRASS Centre de la science de la biodiversité du Québec Guillaume Larocque, Professionnel de recherche. (guillaume.larocque@mcgill.ca) Février 2013 NOUVELLE VERSION DE CET ATELIER - CLIQUEZ ICI 1 - Installation de QGIS et GRASS text/html 2012-02-22T16:47:57+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/osgisfr2?rev=1329929277&do=diff GRASS Étape 10: Assurez-vous que l'extension GRASS est activée et que la barre d'icônes GRASS est sélectionnée dans >Vue>Barre d'outils. Cliquez sur l'icône Nouveau jeu de données (New mapset) et définissez une nouvelle Géodatabase GRASS, un nouveau Secteur (donnez lui le nom Atelier2), choisissez le SCR UTM 18N (NAD83), spécifiez la région GRASS par défaut en fixant l'emprise courante de QGIS et spécifiez un nom pour le Jeu de données (mapset). text/html 2013-10-03T15:30:51+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/osgisfr_installation?rev=1380814251&do=diff Installation de QGIS et GRASS Quantum GIS 2.0.1 et GRASS 6.4.3 (ou 6.4.2) seront utilisés pour cet atelier. Veuillez vous assurer d'avoir les logiciels proprement installés sur votre ordinateur avant l'atelier. Pour les utilisateurs de Windows. Installez simplement QGIS et GRASS avec le programme d'installation OSGeo4W disponible ici: text/html 2012-11-22T16:45:52+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/osgisinstall?rev=1353602752&do=diff Installation of QGIS and GRASS Quantum GIS 1.8.0 and GRASS 6.4.2 (or 6.4.3) will be used for this workshop. Please make sure that you have the appropriate versions installed prior to the workshop. For Windows users: Simply install QGIS and GRASS using the OSGeo4W installer available text/html 2012-11-20T22:01:51+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/osgisold?rev=1353448911&do=diff Introduction to Open Source Geographic information systems: QGIS and GRASS Quebec Centre for Biodiversity Science. Guillaume Larocque, Research Professional. (guillaume.larocque@mcgill.ca) November 2011 1 - Installation of QGIS and GRASS Quantum GIS 1.8.0 and GRASS 6.4.2 will be used for this workshop. Please make sure that you have the appropriate versions installed prior to the workshop. text/html 2015-04-20T22:06:07+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/osspatial?rev=1429567567&do=diff Advanced Spatial Analysis with Open Source Tools Installation of tools Installing PostGIS For Windows and Mac users * Install PostgreSQL from the EntrepriseDB website * When prompted to install stackbuilder, accept to install it and choose to install PostGIS under spatial extensions. When prompted, choose to create a spatial database and name it qcbs_workshop. Answer text/html 2014-12-02T21:13:05+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/phylogenetics?rev=1417554785&do=diff Phylogenetic analyses * See also this page on the blog with details about phylogenetic analyses Computer programs * raxml A tool for Phylogenetic Analysis and Post-Analysis of Large Phylogenies using Maximum Likelihood. * fasttree A alternative approach to RAxML. Much (much) faster, (marginally) less accurate? text/html 2011-06-30T16:24:35+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/phylogeny_journal_club?rev=1309451075&do=diff “Que faire de plus avec mon arbre phylogénétique” club de lecture du CSBQ du 21 juin 2011 Le 21 juin 2011, sept membres du CSBQ se sont réunis pour un club de lecture sur le thème : “Que faire de plus avec mon arbre phylogénétique”. Annie a débuté la rencontre en présentant une très brève introduction aux étapes principales et aux logiciels disponibles pour mener une analyse phylogénétique, afin de permettre aux non-initiés de s'y retrouver dans la littérature scientifique. A voir sur notre… text/html 2013-09-11T17:30:01+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/phylogeny_with_beast?rev=1378920601&do=diff Dating a node with BEAST2.0 For details, read <http://beast2.cs.auckland.ac.nz/index.php/Main_Page> and <http://beast2.cs.auckland.ac.nz/index.php/FAQ> . For any problem, do not hesitate to browse through the list of questions on the BEAST forum <https://groups.google.com/forum/#!forum/beast-users> . Exercise description The exercise is mainly based on the Divergence Dating tutorial, but also includes a few screen captures. text/html 2012-04-04T21:15:22+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/postgres?rev=1333574122&do=diff Introduction to Database Management Systems with PostgreSQL Many-to-many Solution: additional table with both Keys. Hierarchy Recursive relationships Exercise 1 - Import data into PostgreSQL Exercise 2 - Insert statement Exercise 3 - Select statement text/html 2017-10-02T23:47:28+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/profile_mablegaddy?rev=1506988048&do=diff I'm Dyan (22) from Toppo, Italy. I'm learning Swedish literature at a local university and I'm just about to graduate. I have a part time job in a the office. My homepage - rechnung schreiben (http://www.arcadekiss.com/) text/html 2017-10-02T21:28:03+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/profile_ruthkmz283334?rev=1506979683&do=diff Malus pumila Chief executive officer Tim Cook and Google cofounder Larry Page. AP / Getty Images / Justin Sullivan text/html 2017-09-30T00:04:27+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/profile_venuslarkin902?rev=1506729867&do=diff Hello! My name is Donny. It is a little about myself: I live in France, my city of Sainte-Genevieve-Des-Bois. It's called often Eastern or cultural capital of ILE-DE-FRANCE. I've married 3 years ago. I have 2 children - a son (Gail) and the daughter (Eric). We all like Kiteboarding. text/html 2021-10-14T03:57:35+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/r?rev=1634183855&do=diff AVIS IMPORTANT Depuis l'automne 2021, ce wiki a été discontinué et n'est plus activement développé. Tout le matériel mis à jour et les annonces pour la série d'ateliers R du CSBQ se trouvent maintenant sur le site web de la série d'ateliers R du CSBQ. Veuillez mettre à jour vos signets en conséquence afin d'éviter les documents périmés et/ou les liens brisés. text/html 2021-10-14T03:49:30+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/r_atelier1?rev=1634183370&do=diff AVIS IMPORTANT Depuis l'automne 2021, ce wiki a été discontinué et n'est plus activement développé. Tout le matériel mis à jour et les annonces pour la série d'ateliers R du CSBQ se trouvent maintenant sur le site web de la série d'ateliers R du CSBQ. Veuillez mettre à jour vos signets en conséquence afin d'éviter les documents périmés et/ou les liens brisés. $A_{cercle} = \pi r^2$ text/html 2021-10-14T03:49:47+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/r_atelier2?rev=1634183387&do=diff AVIS IMPORTANT Depuis l'automne 2021, ce wiki a été discontinué et n'est plus activement développé. Tout le matériel mis à jour et les annonces pour la série d'ateliers R du CSBQ se trouvent maintenant sur le site web de la série d'ateliers R du CSBQ. Veuillez mettre à jour vos signets en conséquence afin d'éviter les documents périmés et/ou les liens brisés. text/html 2021-10-14T03:50:50+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/r_atelier3?rev=1634183450&do=diff AVIS IMPORTANT Depuis l'automne 2021, ce wiki a été discontinué et n'est plus activement développé. Tout le matériel mis à jour et les annonces pour la série d'ateliers R du CSBQ se trouvent maintenant sur le site web de la série d'ateliers R du CSBQ. Veuillez mettre à jour vos signets en conséquence afin d'éviter les documents périmés et/ou les liens brisés. text/html 2021-10-14T03:51:02+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/r_atelier4?rev=1634183462&do=diff AVIS IMPORTANT Depuis l'automne 2021, ce wiki a été discontinué et n'est plus activement développé. Tout le matériel mis à jour et les annonces pour la série d'ateliers R du CSBQ se trouvent maintenant sur le site web de la série d'ateliers R du CSBQ. Veuillez mettre à jour vos signets en conséquence afin d'éviter les documents périmés et/ou les liens brisés. text/html 2021-10-14T03:51:14+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/r_atelier5?rev=1634183474&do=diff AVIS IMPORTANT Depuis l'automne 2021, ce wiki a été discontinué et n'est plus activement développé. Tout le matériel mis à jour et les annonces pour la série d'ateliers R du CSBQ se trouvent maintenant sur le site web de la série d'ateliers R du CSBQ. Veuillez mettre à jour vos signets en conséquence afin d'éviter les documents périmés et/ou les liens brisés. text/html 2021-10-14T03:51:35+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/r_atelier6?rev=1634183495&do=diff AVIS IMPORTANT Depuis l'automne 2021, ce wiki a été discontinué et n'est plus activement développé. Tout le matériel mis à jour et les annonces pour la série d'ateliers R du CSBQ se trouvent maintenant sur le site web de la série d'ateliers R du CSBQ. Veuillez mettre à jour vos signets en conséquence afin d'éviter les documents périmés et/ou les liens brisés. text/html 2021-10-14T03:51:52+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/r_atelier7?rev=1634183512&do=diff AVIS IMPORTANT Depuis l'automne 2021, ce wiki a été discontinué et n'est plus activement développé. Tout le matériel mis à jour et les annonces pour la série d'ateliers R du CSBQ se trouvent maintenant sur le site web de la série d'ateliers R du CSBQ. Veuillez mettre à jour vos signets en conséquence afin d'éviter les documents périmés et/ou les liens brisés. text/html 2021-10-14T03:52:07+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/r_atelier8?rev=1634183527&do=diff AVIS IMPORTANT Depuis l'automne 2021, ce wiki a été discontinué et n'est plus activement développé. Tout le matériel mis à jour et les annonces pour la série d'ateliers R du CSBQ se trouvent maintenant sur le site web de la série d'ateliers R du CSBQ. Veuillez mettre à jour vos signets en conséquence afin d'éviter les documents périmés et/ou les liens brisés. text/html 2021-10-14T03:52:17+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/r_atelier9?rev=1634183537&do=diff AVIS IMPORTANT Depuis l'automne 2021, ce wiki a été discontinué et n'est plus activement développé. Tout le matériel mis à jour et les annonces pour la série d'ateliers R du CSBQ se trouvent maintenant sur le site web de la série d'ateliers R du CSBQ. Veuillez mettre à jour vos signets en conséquence afin d'éviter les documents périmés et/ou les liens brisés. text/html 2021-10-14T03:52:31+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/r_atelier10?rev=1634183551&do=diff AVIS IMPORTANT Depuis l'automne 2021, ce wiki a été discontinué et n'est plus activement développé. Tout le matériel mis à jour et les annonces pour la série d'ateliers R du CSBQ se trouvent maintenant sur le site web de la série d'ateliers R du CSBQ. Veuillez mettre à jour vos signets en conséquence afin d'éviter les documents périmés et/ou les liens brisés. text/html 2020-10-28T14:42:48+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/r_cancellation_policy?rev=1603896168&do=diff Politiques d'ateliers R du CSBQ | QCBS R Workshops Policy Registration | Registration ---------- GRATUIT pour les étudiant.e.s et les chercheur.e.s du CSBQ. 50$ par atelier pour des étudiant.e.s non-membres du CSBQ, à payer avant l’inscription. text/html 2016-11-03T02:46:43+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/r_hadleyverse?rev=1478141203&do=diff QCBS R Workshops <http://qcbs.ca/> This series of 10 workshops walks participants through the steps required to use R for a wide array of statistical analyses relevant to research in biology and ecology. These open-access workshops were created by members of the QCBS both for members of the QCBS and the larger community. text/html 2016-11-09T22:24:38+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/r_hadleyverse_fr?rev=1478730278&do=diff Ateliers R du CSBQ <http://qcbs.ca/fr/> Cette série de 10 ateliers guide les participants à travers les étapes requises afin de maîtriser le logiciel R pour une grande variété d’analyses statistiques pertinentes en recherche en biologie et en écologie. Ces ateliers en libre accès ont été créés par des membres du CSBQ à la fois pour les membres du CSBQ et pour la grande communauté d’utilisateurs de R. text/html 2018-09-25T18:37:01+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/r_mariehelene?rev=1537900621&do=diff It's my page now text/html 2014-11-21T21:31:39+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/r_programming_gl?rev=1416605499&do=diff Knitr Knitr is a package that can be used to generate dynamic reports or web pages from R code. The code is evaluated at the moment the report is generated. Code can be easily written in RStudio use the Markdown language. View this page in Markdown language, and view the resulting web page. text/html 2017-05-09T16:16:26+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/r_symposium?rev=1494346586&do=diff *Workshop material has been added in the abstract section below Le réseau étudiant du CSBQ organise pour la première fois en 2017 un colloque/retraite de deux jours sur l'utilisation du logiciel R en science de la biodiversité. L'objectif de ce colloque est de présenter plusieurs méthodes avancées non couvertes par la text/html 2018-02-09T21:27:59+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/r_symposium_2017?rev=1518211679&do=diff *Workshop material has been added in the abstract section below Le réseau étudiant du CSBQ organise pour la première fois en 2017 un colloque/retraite de deux jours sur l'utilisation du logiciel R en science de la biodiversité. L'objectif de ce colloque est de présenter plusieurs méthodes avancées non couvertes par la text/html 2018-07-07T14:19:08+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/r_symposium_2018?rev=1530973148&do=diff 2e Colloque R CSBQ | 2nd QCBS R Symposium Le 2e symposium R du CSBQ aura lieu le 10 et 11 mai 2018 à la Station de Biologie des Laurentides The 2nd QCBS R symposium will be held on May 10th and 11th 2018 at the Station de Biologie des Laurentides text/html 2019-10-12T14:46:09+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/r_symposium_2019?rev=1570891569&do=diff 3e Colloque R du CSBQ | 3rd QCBS R Symposium Le 3e Colloque R du CSBQ a eu lieu le 10, 11 et 12 octobre 2019 à la Reserve Naturelle Gault The 3rd QCBS R symposium was held from October 10th to 12th 2019 at the Gault Nature Reserve Description text/html 2019-10-08T21:33:48+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/r_symposium_2019_code_of_conduct?rev=1570570428&do=diff 3e Colloque R du CSBQ | 3rd QCBS R Symposium Le 3e Colloque R du CSBQ aura lieu le 10, 11 et 12 octobre 2019 à la Reserve Naturelle Gault The 3rd QCBS R symposium will be held from October 10th to 12th 2019 at the Gault Nature Reserve Code of Conduct text/html 2019-10-08T23:48:54+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/r_symposium_2019_info?rev=1570578534&do=diff 3e Colloque R du CSBQ | 3rd QCBS R Symposium Le 3e Colloque R du CSBQ aura lieu le 10, 11 et 12 octobre 2019 à la Reserve Naturelle Gault The 3rd QCBS R symposium will be held from October 10th to 12th 2019 at the Gault Nature Reserve Final Preparations | Préparation finale text/html 2019-09-19T18:45:44+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/r_symposium_2019_t?rev=1568918744&do=diff 3e Colloque R du CSBQ | 3rd QCBS R Symposium Le 3e Colloque R du CSBQ aura lieu le 10, 11 et 12 octobre 2019 à la Reserve Naturelle Gault The 3rd QCBS R symposium will be held from October 10th to 12th 2019 at the Gault Nature Reserve Description text/html 2020-03-12T20:40:32+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/r_symposium_2020?rev=1584045632&do=diff 3e Colloque R du CSBQ | 3rd QCBS R Symposium Le 3e Colloque R du CSBQ a eu lieu le 10, 11 et 12 octobre 2019 à la Reserve Naturelle Gault The 3rd QCBS R symposium was held from October 10th to 12th 2019 at the Gault Nature Reserve Description text/html 2017-04-21T18:48:00+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/r_symposium_open_science?rev=1492800480&do=diff Workshop 5: Open Science and Reproducibility in R April 25, 2017 Developed by Monica Granados Introduction Perhaps you are familiar with this workflow: 1. Collect data 2. Input data into a spreadsheet software 3. Export data to statistical analysis software 4. Plot results using a third piece of software 5. Import images into a word processor 6. Export manuscript pdf for submission text/html 2021-10-13T20:02:45+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/r_workshop1?rev=1634155365&do=diff MAJOR UPDATE As of Fall 2021, this wiki has been discontinued and is no longer being actively developed. All updated materials and announcements for the QCBS R Workshop Series are now housed on the QCBS R Workshop website. Please update your bookmarks accordingly to avoid outdated material and/or broken links. $A_{circle} = \pi r^2$ text/html 2021-10-13T20:03:21+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/r_workshop2?rev=1634155401&do=diff MAJOR UPDATE As of Fall 2021, this wiki has been discontinued and is no longer being actively developed. All updated materials and announcements for the QCBS R Workshop Series are now housed on the QCBS R Workshop website. Please update your bookmarks accordingly to avoid outdated material and/or broken links. text/html 2021-10-13T20:03:33+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/r_workshop3?rev=1634155413&do=diff MAJOR UPDATE As of Fall 2021, this wiki has been discontinued and is no longer being actively developed. All updated materials and announcements for the QCBS R Workshop Series are now housed on the QCBS R Workshop website. Please update your bookmarks accordingly to avoid outdated material and/or broken links. text/html 2021-10-13T20:04:00+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/r_workshop4?rev=1634155440&do=diff MAJOR UPDATE As of Fall 2021, this wiki has been discontinued and is no longer being actively developed. All updated materials and announcements for the QCBS R Workshop Series are now housed on the QCBS R Workshop website. Please update your bookmarks accordingly to avoid outdated material and/or broken links. $ mˆ2 $ text/html 2021-10-13T20:04:41+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/r_workshop5?rev=1634155481&do=diff MAJOR UPDATE As of Fall 2021, this wiki has been discontinued and is no longer being actively developed. All updated materials and announcements for the QCBS R Workshop Series are now housed on the QCBS R Workshop website. Please update your bookmarks accordingly to avoid outdated material and/or broken links. $CO_{2}$$CO_2$ text/html 2021-10-13T19:57:29+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/r_workshop6?rev=1634155049&do=diff MAJOR UPDATE As of Fall 2021, this wiki has been discontinued and is no longer being actively developed. All updated materials and announcements for the QCBS R Workshop Series are now housed on the QCBS R Workshop website. Please update your bookmarks accordingly to avoid outdated material and/or broken links. text/html 2021-10-13T20:05:00+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/r_workshop7?rev=1634155500&do=diff MAJOR UPDATE As of Fall 2021, this wiki has been discontinued and is no longer being actively developed. All updated materials and announcements for the QCBS R Workshop Series are now housed on the QCBS R Workshop website. Please update your bookmarks accordingly to avoid outdated material and/or broken links. text/html 2021-10-13T20:05:22+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/r_workshop8?rev=1634155522&do=diff MAJOR UPDATE As of Fall 2021, this wiki has been discontinued and is no longer being actively developed. All updated materials and announcements for the QCBS R Workshop Series are now housed on the QCBS R Workshop website. Please update your bookmarks accordingly to avoid outdated material and/or broken links. text/html 2021-10-13T20:05:38+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/r_workshop9?rev=1634155538&do=diff MAJOR UPDATE As of Fall 2021, this wiki has been discontinued and is no longer being actively developed. All updated materials and announcements for the QCBS R Workshop Series are now housed on the QCBS R Workshop website. Please update your bookmarks accordingly to avoid outdated material and/or broken links. text/html 2021-10-13T20:05:51+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/r_workshop10?rev=1634155551&do=diff MAJOR UPDATE As of Fall 2021, this wiki has been discontinued and is no longer being actively developed. All updated materials and announcements for the QCBS R Workshop Series are now housed on the QCBS R Workshop website. Please update your bookmarks accordingly to avoid outdated material and/or broken links. text/html 2011-02-18T19:56:59+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/r_workshops?rev=1298059019&do=diff Linear Mixed Models Random effects Categorical variable with levels A mixed model always has at least one fixed and one random effect. Any model with random effects is a mixed model text/html 2012-04-16T16:25:45+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/real_time_pcr?rev=1334593545&do=diff Quantitative real time PCR q-real-time PCR is a laboratory technique where the amplified DNA is detected at each cycle, as the reaction progresses in real time. Two common methods for detection of DNA amplified products in real-time PCR are: * Using double stranded DNA binding dyes (mainly SYBR green) text/html 2011-05-13T02:07:38+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/refrigerated_incubators?rev=1305252458&do=diff We compared four models of large refrigerated incubators available from major laboratory instruments suppliers. We were interested in understanding the differences between the standard models and the models that are in the middle price range for these instruments. text/html 2025-03-27T20:37:50+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/rep_network?rev=1743107870&do=diff Contacts Si vous avez des questions générales, écrivez-nous à l'adresse courriel <csbq.qcbs.student@gmail.com>. For general queries, please use our email address <csbq.qcbs.student@gmail.com>. Représentants étudiants du CSBQ | QCBS Rep's network University Name Email Position text/html 2018-06-11T14:33:04+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/reseau_etudiant?rev=1528727584&do=diff Réseau étudiant du CSBQ English page - QCBS Student Network <http://qcbs.ca/fr/> De nombreux moyens de communication ont été mis en place par le CSBQ dans le but de faciliter le réseautage étudiant, d'encourager le partage d'informations et de compétences et de favoriser l'engagement des étudiants au sein du CSBQ. Afin de vous permettre de profiter au mieux de ces différents outils, un inventaire complet en est dressé ci-dessous. text/html 2014-11-04T16:09:46+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/resources_for_r?rev=1415117386&do=diff R for biodiversity research Books on R * Use R - Book series - These books are available online for free if your library is a subscriber. Titles include “Forest Analytics with R”, “Functional Data Analysis with R and MATLAB”, “A Primer of Ecology with R” text/html 2020-02-03T19:38:55+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/retraite_de_redaction?rev=1580758735&do=diff Première retraite de rédaction du CSBQ Envie de tenter l'expérience d'une retraite de rédaction et cela à petit prix, voici votre chance... Une retraite de rédaction c'est plus de 20h d'écriture productive en 3 jours! Tout est pris en charge : les repas, l'hébergement et l'horaire text/html 2013-08-26T14:09:48+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/rqda?rev=1377526188&do=diff RQDA Workshop STEP 1: Downloading RQDA === Instructions for Mac, Linux and Windows, GO TO INSTALLATION ON RQDA WEBSITE === [CLICK HERE] STEP 2: Workshop materials: Make sure raw text data files are accessible for workshop Mock research objective: Understanding the representation and role of media in the climate change debate text/html 2014-11-03T16:18:54+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/rworkshop8?rev=1415031534&do=diff QCBS R Workshops <http://qcbs.ca/> This series of 8 workshops walks participants through the steps required to use R for a wide array of statistical analyses relevant to research in biology and ecology. These open-access workshops were created by members of the QCBS both for members of the QCBS and the larger community. text/html 2017-09-26T04:52:40+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/rwr?rev=1506401560&do=diff QCBS R Workshops Revamping September 26 and 28, 2017 - Université Concordia, Montréal (QC) Informations: Pedro Henrique Braga, Léa Blondel,Marie-Hélène Brice Info général - General info Où/ where: Mornings: Room XXXX, GE Building, Richard J. Renaud Science Complex, Université Concordia, 7141 Sherbrooke Street W. Montreal, Quebec, H4B 1R6 text/html 2013-11-20T20:24:30+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/sample_collection_and_dna_extraction?rev=1384979070&do=diff Preserving field-collected samples to maintain DNA integrity Introduction Genetic diversity experiments have become routine in many fields of biodiversity science. Despite the essential prerequisite of obtaining good-quality DNA from samples, there are surprisingly very few reviews on effective field sampling for preserving DNA before it extraction is carried out in the laboratory. Here, general recommendations are presented according to a recent review by Nagy 2010 text/html 2016-04-15T18:17:00+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/sci_comm?rev=1460744220&do=diff How to give a great scientific talk <http://qcbs.ca/fr/> Created by: Cédric Frenette Dussault, PhD Last update: April 15 2016 Summary Speaking in public during a symposium, a departmental seminar or during a university class is part of academic life. We seldom realize it, but from thinking about the structure of a talk to actually delivering the talk requires much time and effort if we are to succeed in engaging and efficient communication. This document was created to provide you with too… text/html 2014-11-17T18:27:16+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/sequence_alignment?rev=1416248836&do=diff Sequence Alignments * MUSCLE. Multiple Sequence Alignment. Also has a nice web interface to submit jobs directly online * MAFFT. Multiple Sequence Alignment program for unix-like operating systems. Alternative to MUSCLE * t-coffee. Multiple Sequence Alignment. Alternative to MUSCLE text/html 2011-05-19T17:14:56+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/setting_up_a_molecular_biology_laboratory?rev=1305825296&do=diff Running molecular biology experiments for biodiversity science requires access to a variety of large and small instruments and reagents. * List of instruments * Purchasing large instruments * Common methods and reagents text/html 2014-02-03T21:40:41+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/sigavance?rev=1391463641&do=diff Utiliser R avec GRASS Avant la première utilisation (dans R): install.packages('spgrass6', dependencies=TRUE) Utilisateurs Mac: install.packages('spgrass6', type='source', dependencies=TRUE) Commandes spgrass 6: execGRASS execute GRASS commands (when launched from R) system execute GRASS commands (when launched from GRASS) readRAST6 read GRASS raster files writeRAST6 write GRASS raster files readVECT6 read GRASS vect… text/html 2025-11-18T16:20:57+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/sigenligne?rev=1763482857&do=diff Introduction aux systèmes d'information géographique avec QGIS et GRASS Centre de la science de la biodiversité du Québec Guillaume Larocque, Professionnel de recherche. (guillaume.larocque@mcgill.ca) Version en ligne. Nov 2025. Présentation text/html 2014-01-27T22:06:14+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/siglibres?rev=1390860374&do=diff Introduction aux systèmes d'information géographique libres : QGIS and GRASS CETTE PAGE EST POUR UN ATELIER QUI N'EST PLUS OFFERT. ACCÉDEZ À LA VERSION COURANTE DE L'ATELIER ICI. Centre de la science de la biodiversité du Québec Guillaume Larocque, Professionnel de recherche. (guillaume.larocque@mcgill.ca) text/html 2011-05-14T02:15:29+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/small_vacuum_centrifugal_concentrator?rev=1305339329&do=diff Savant DNA120 (Fisher Mandel) Vacufuge Complete system (Eppendorf) Volume Range/Tube 0.5 to 2.0 mL 0.2 to 25 ml (max height of 27 mm) Maximum Tube Capacity “36 tubes 2ml (72 when using the 0.6 ml tubes rotor)” “ text/html 2019-04-15T20:58:11+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/spatialspecial?rev=1555361891&do=diff QCBS workshop on the use of open source tools for advanced spatial analysis April 16 2019, McGill University. * Link to the Prezi presentation Installation of software Installation of PostGIS For Windows and Mac users * Install PostgreSQL from the EntrepriseDB website text/html 2017-02-20T21:59:28+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/specialspatial?rev=1487627968&do=diff Atelier du CSBQ sur l'utilisation des logiciels libres pour l'analyse spatiale avancée. 23 février 2017, Université du Québec à Rimouski. * Lien vers la présentation Prezi * Présentation Prezi simultanée Installation des logiciels Installation de PostGIS Pour utilisateurs Windows et Mac * Installez PostgreSQL depuis le site web text/html 2014-11-21T19:43:34+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/standalone_blast?rev=1416599014&do=diff Install BLAST+ locally. Find and install the latest version that corresponds to your operating system (MAC, Windows, Linux): <ftp://ftp.ncbi.nlm.nih.gov/blast/executables/LATEST/> ### DOWNLOAD A PREFORMATED DATABASE FROM NCBI### * download the protein nr database $ update_blastdb.pl nr * The database is in *tar.gz format which needs to be unzipped like this: text/html 2021-12-02T18:47:20+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/start?rev=1638470840&do=diff Le Wiki du CSBQ - The QCBS Wiki Le CSBQ a mis sur pied un wiki afin de permettre aux membres d'interagir sur des sujets relatifs à la science de la biodiversité. | The QCBS established a wiki to allow members to interact with each other on topics related to biodiversity science. text/html 2011-01-31T19:48:09+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/statistics?rev=1296503289&do=diff Statistical methods for biodiversity research General information * Ordination methods for ecologists * Statistics for ecologists A collection of useful links to sites with statistical or mathematical material relevant to ecologists. Books * Analyzing Ecological Data - This book is available online here. * Numerical Ecology 2nd edition - by Pierre and Louis Legendre. A classic reference text in quantitative ecology. text/html 2018-06-11T14:34:03+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/student_network?rev=1528727643&do=diff QCBS Student Network Page en français - Réseau étudiant du CSBQ <http://qcbs.ca/fr/> A number of communication tools were put in place by the QCBS to facilitate student networking, to promote sharing of information and skills and to support the involvement of students within the QCBS. The main tools are detailed below. text/html 2016-10-22T17:25:19+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/swc?rev=1477157119&do=diff Atelier Software Carpentry Workshop 24-25 octobre, 2016, Université de Montréal, Montréal (QC) Informations: Eva Delmas, Mathilde Besson,Timothée Poisot,Zofia Taranu Info général - General info Où/ where: Salle C-3061 (salle multi-fonctionnelle), Pavillon Lionel Groulx, métro Université de Montréal, 3150, rue Jean-Brillant, Montréal text/html 2016-05-20T21:43:03+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/viz?rev=1463780583&do=diff Visual Communication Workshop May 21-22th, 2016 at Gault nature reserve, Mont-Saint-Hilaire Informations: Steve Vissault (UdS), Zofia Taranu (UdM), Kevin Cazelles (UQAR) Détails | Details FR - Ce nouvel atelier mettra l'accent sur des concepts théoriques et pratiques, ainsi que des outils émergents, pour améliorer notre capacité de visualiser et communiquer nos données. L'atelier a pour but de: (1) nous aider à nous familiariser aux normes de la conception visuelle en science en apprenant … text/html 2011-11-15T13:45:13+0000 Anonymous (anonymous@undisclosed.example.com) https://wiki.qcbs.ca/workshops?rev=1321364713&do=diff QCBS workshops * Open source GIS workshop