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buildingaphylogeny [2013/09/12 21:12] anniearchambault |
buildingaphylogeny [2013/09/16 08:33] (current) anniearchambault |
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| **PRANK** | **PRANK** | ||
| - | Löytynoja, A., and N. Goldman. 2010. [[http://www.biomedcentral.com/1471-2105/11/579/abstract|webPRANK: a phylogeny-aware multiple sequence aligner with interactive alignment browser]]. BMC Bioinformatics 11: 579. | + | Löytynoja, A., and N. Goldman. 2010. [[http://www.biomedcentral.com/1471-2105/11/579/abstract|webPRANK: a phylogeny-aware multiple sequence aligner with interactive alignment browser]]. BMC Bioinformatics 11: 579. \\ |
| + | Löytynoja, A., and N. Goldman. 2005. [[http://www.pnas.org/content/102/30/10557|An algorithm for progressive multiple alignment of sequences with insertions]]. Proceedings of the National Academy of Sciences of the United States of America 102: 10557–10562 \\ | ||
| Dowload the program http://code.google.com/p/prank-msa/downloads/list. The README is here http://code.google.com/p/prank-msa/wiki/PRANK?tm=6 \\ | Dowload the program http://code.google.com/p/prank-msa/downloads/list. The README is here http://code.google.com/p/prank-msa/wiki/PRANK?tm=6 \\ | ||
| In the terminal, change directory to where the compressed file is located. Uncompress by typing: \\ | In the terminal, change directory to where the compressed file is located. Uncompress by typing: \\ | ||
