====== Atelier Software Carpentry Workshop ======
**24-25 octobre, 2016, Université de Montréal, Montréal (QC)**

Informations: [[eva.delmas@gmail.com|Eva Delmas]],[[mathilde.besson@umontreal.ca| Mathilde Besson]],[[t.poisot@gmail.com|Timothée Poisot]],[[zofia.taranu@gmail.com|Zofia Taranu]]



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===== Info général - General info =====

**Où/ where:** 

Salle C-3061 (salle multi-fonctionnelle), Pavillon Lionel Groulx, métro Université de Montréal, 3150, rue Jean-Brillant, Montréal 

Salles C2081-2083 pour le lunch

**Repas/ meals:** 

Le petit déjeuner (8h30-9h), pause café matinale (10h15), lunch (12h15) et pausé café dans l'après midi (vers 15h) seront fournis par le CSBQ durant les deux jours. 

Breakfast (8:30-9:00am), morning coffee break (10:15am), lunch (12:15pm), and afternoon coffee break (3:00pm) will be provided by the QCBS over the 2 days.

**Pour y participer/To participate:**

Tous les participants doivent cependant débourser des frais pour l'inscription (15\$ pour membres CSBQ et 50\$ pour les non-members).

However, all participants must pay a registration fee to cover for some of those costs (15\$ for QCBS members, 50\$ for non-members).
===== Inscription - Registration =====

http://registration.qcbs.ca/pay/node/64

===== Horaire - Schedule =====

**Instructeurs - instructors **: Timothée Poisot et Isabelle Laforest Lapointe

**Aides-  helpers **: Eva Delmas, Mathilde Besson, Steve Vissault et Zofia Taranu 


==== Jour - Day 1: The Unix Shell + Automation and Make Lessons ====

^   9:00   | Introducing the Shell   | What is a command shell and why would I use one? |
^   9:05   | Navigating Files and Directories | How can I move around on my computer? How can I see what files and directories I have? How can I specify the location of a file or directory on my computer?|
^   9:20   | Working With Files and Directories  |How can I create, copy, and delete files and directories? How can I edit files?|
^   9:35   | Pipes and Filters |How can I combine existing commands to do new things?|
^   9:50   | Loops      |How can I perform the same actions on many different files?|
^   10:05  | Shell Scripts     |How can I save and re-use commands?|
^   10:20  | Finding Things         |How can I find files? How can I find things in files?|
^   10:35  | **Pause Café**        ||
^   10:45  | Introduction to Make  |How can I make my results easier to reproduce? |
^   11:15  | Makefiles   |How do I write a simple Makefile?|
^   11:45  | Automatic Variables   |How can I abbreviate the rules in my Makefiles?|
^   12:15  | **Lunch**    ||
^   1:30   | Dependencies on Data and Code |How can I write a Makefile to update things when my scripts have changed rather than my input files?|
^   2:00   | Pattern Rules   |How can I define rules to operate on similar files?|
^   2:30   | Variables   |How else can I eliminate redundancy in my Makefiles?|
^   3:00   | Functions  |How else can I eliminate redundancy in my Makefiles?|
^   3:30   | Self-Documenting Makefiles      |How should I document a Makefile?|
^   4:00   | Conclusion     |What are the advantages and disadvantages of using tools like Make?|
^   4:30   | **Finish**    ||



==== Jour - Day 2: Version Control with Git + Databases and SQL ====

^   9:00   | Automated Version Control   | What is version control and why should I use it?|
^   9:05   | Setting Up Git | How do I get set up to use Git?|
^   9:10   | Creating a Repository  | Where does Git store information?|
^   9:20   | Tracking Changes |How do I record changes in Git? How do I check the status of my version control repository? How do I record notes about what changes I made and why?|
^   9:40   | Exploring History|How can I identify old versions of files? How do I review my changes? How can I recover old versions of files?|
^   10:05  | Ignoring Things     |How can I tell Git to ignore files I don’t want to track?|
^   10:10  | Remotes in GitHub | How do I share my changes with others on the web?|
^   10:40  | **Pause Café**        ||
^   10:50  | Collaborating  |How can I use version control to collaborate with other people? |
^   11:15  | Conflicts   | What do I do when my changes conflict with someone else’s?|
^   11:30  | Open Science   | How can version control help me make my work more open?|
^   11:40  | Licensing | What licensing information should I include with my work?|
^   11:45  | Citation | How can I make my work easier to cite?|
^   11:47  | Hosting   | Where should I host my version control repositories?|
^   11:57  | Using Git from RStudio   | How can I use Git with RStudio?|
^   12:07  | **Lunch**     | |
^   1:30   | Selecting Data  | How can I get data from a database?|
^   1:45   | Sorting and Removing Duplicates  |How can I sort a query’s results? How can I remove duplicate values from a query’s results?|
^   2:15   | Filtering     |How can I select subsets of data?|
^   2:25   | Calculating New Values     |How can I calculate new values on the fly?|
^   2:35   | Missing Data   | How do databases represent missing information? What special handling does missing information require?|
^   3:15   | Aggregation   | How can I calculate sums, averages, and other summary values?|
^   3:25   | Combining Data   | How can I combine data from multiple tables?|
^   4:15   | Data Hygiene   | How should I format data in a database, and why?|
^   4:35   | Creating and Modifying Data   | How can I create, modify, and delete tables and data?|
^   5:10   | Programming with Databases - R   | How can I access databases from programs written in R?|
^   5:45   | **Finish**    ||